Optimalisasi Teknik Ekstraksi dan Isolasi DNA Tanaman Suren (Toona Sureni Merr.) untuk Analisis Keragaman Genetik berdasarkan Random Amplified Polymorphic DNA (RAPD)

Muh Restu, Mukrimin Mukrimin, Gusmiaty Gusmiaty

Abstract


The species of trees have different secondary compounds that need optimum extraction techniques. Appropriate extraction techniquesdetermine the quality and quantity of DNA produced. This research aims to found optimal of extraction methods and DNA isolation, thento created genome DNA in high quality and quantity, so that it can be using for genetic variation analyses in Suren (Toona sureni Merr.) byRandom Amplified Polymorphic DNA (RAPD). This study shows that DNA concentrates were 763.3 μg/ml, 180.0 μg/ml, 383.3 μg/ml, and436.7 μg/ml. While based on the results of PCR amplification using the primers OPD 03 shows that the four extraction methods used, the extraction method of number 3 has been able to produce genomic DNA with better quality and more number of bands, although the quantityis lower.


Keywords


CTAB, DNA extraction, Toona sureni

Full Text:

PDF

References


Ardiana, D.W. 2009. Teknik isolasi DNA genom tanaman pepaya dan jeruk dengan menggunakan modifikasi buffer CTAB. Buletin Teknik Pertanian 14(1): 12-16.

Doyle, J.J & Doyle, J.L. 1990. Isolation of plant DNA from fresh tissue. Focus 12: 13-15.

Fang, G.S., Hammer & R.Grumet. 1992. A quick and inexpensive method for removing polysaccharides from plant genomic DNA. Biotechniques 13(1): 52-57.

Lengkong, E.F., Hartana, A & Suharsono. 1998. Keragamangenetika beberapa kultivar kelapa berdasarkan penanda RAPD (Random Amplified Polymorphic DNA). Prosiding Seminar Sehari Hasil-hasil Penelitian Bidang Ilmu Hayat. Bogor, 3 September 1998.

Masniawati, A. 2000. Keragaman genetik kelapa dalam mapanget- 32 (dmt-32) hasil penyerbukan sendiri berdasarkan penanda molekuler random amplified polymorphic DNA (RAPD). Tesis Pascasarjana. Bogor: Institut Pertanian Bogor.

Milligan, B.G. 1992. Plant DNA Isolation. In: A.R. Hoelzel (Ed). Molecular Genetic Analysis of Populations. A Practical Approach. New York: Oxford University Press.

Pharmawati, M. 2009. Optimalisasi ekstraksi DNA dan PCR-RAPD pada grevillea spp. (Proteaceae). Jurnal Biologi 13(1): 12-16.

Porebski, S., Bailey, G.L & Baum, B.R. 1997. Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components. Plant Mol Biol Reptr 15(1): 8-15.

Pratama, B.A. 2009. Analisis Keragaman Genetika Bitti (Vitex cofassus Reinw) pada Provenansi Bulukumba Berdasarkan Penanda Molekuler Random Amplified Polymorphic DNA (RAPD). Skripsi Fakultas Kehutanan. Makassar: Universitas Hasanuddin.

Sambrook, J., Fritsch, E.F & Maniatis, T. 1989. Molecular Cloning. A Laboratory Manual. USA: Cold Spring Harbor Lab Press.

Surzycki, S. 2000. Basic Techniques in Molecular Biology. Berlin, Heidelberg, New York: Springer-Verlag.

Tel-zur, N., S., Abbo, D., Myslabodski & Mizrahi, Y. 1999. Modified CTAB procedure for DNA isolation from epiphytic cacti of genera hylocereus and selenicereus (Cactaceae). Plant Mol Biol Reptr 17: 249-254.

Wilkins, T.A & Smart, L.B. 1996. Isolation of RNA from Plant Tissue. Di dalam: Krieg, P.A. (ed). A Laboratory Guide to RNA. Isolation, Analysis and Synthesis. New York: Wiley–Liss.




DOI: http://dx.doi.org/10.31258/jnat.14.1.138-142

Refbacks

  • There are currently no refbacks.


Copyright (c) 2012 Muh Restu, Mukrimin, Gusmiaty

Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 International License.